Gym 1 > Mystic Town > Small Town > Platepics City > Platepics Research Center > Beat Team Magma > Exchange the B-Ticket for the Mach Bike > Find the gym leader near Route F and Gym 2 > Route H > Route I > Teaes City > Rival Battle > Route J > Turzoro City > Battle with Team Aqua (2 times) and Wally > Gym 3 > Obtain the Pokeblock in ahouse > Safari Zone (get HM4 in a house there) > Route P > Habutest Town > Talk to Mr. April > Searound City > Beat Aqua Admin + Get 4th badge (Gym 4) > Searound Underground > Charpos City > Charpos Harbor > Magmar Building > Platepics Research Center (top) > Forest Entrance > Polar Forest > Deep Forest > Torn World + Capture Shaymin > Malias City > Gym 5 > Route R, S > Charpos Island > Festa Zone (if you want to visit) > Route AB > Rival Battle > Charpos Island > Golden City > Honey Village > Obtain Secret Potion > Route AB > Pulhia City > Hotasita City > Gym 6 > Pokemon Contest > Get the 6th badge > Obtain TEA nad HM2 in a house in Pulhia > Ocepac Town > Exchange for the Scope > Teaes City > Gym 7 > Dark Cave (find HM8) > Route F > Meteor Falls > Aragi’s Lab > Puel City Museum > Aqua Hideout > Route U > Underwater > Seafloor Cavern > Route G > Surence Town > Gym 8 > Find Hm 7 in Water Cave (Route E) > Route L > Victory Road > Pokemon League
Additional Missions and Legendary Pokemon Missions
Challenge Island > Gloomist Forest > Find Red Shard (Hippowdon Temple), Blue Shard (Malias Library), Yellow Shard (the house in Platepics City, where you meet Caitlin) > Mt. Fullmoon > Peak > Latias/Latios > Gloomist Forest > Gima’s Rest House > Q Area > Mission 1 > Honey Village obtain the App. in the warehose > Use it in the Gloomist Forest > Find the girls > Return Challenge Factory > Mission 2 > Steven: cave in Route J > Golden City > Vs Sky, obtain the App. > Awake Snorlax > Hole Woods > Unlock the hidden house (there are four green stone: bottomright, top left, top right, bottom left) > Malias Library > Read the middle book > Mt Fiery > Magma Hideout > Festazone, talk to the guard man > Silver Town > Aqua Town > Under water > Vs Archie > Sky Pillar (Route AG) > Awake Rayquaza > Aqua Town, obtain HM 5 > Rebattle Elite Four > Golden City > Prepare: Pokemon know Flash, Rocksmash, Dig, Wailord, Relicanth > Hole Woods > Route AE > Froster Town > Mt blizzard, Route AF > Ancient Ruins > Unlock 3 cave in the Ancient Ruins (use Flash middle,run around clockwise, right down use Rock Smash like Emerald) > Find trio beast: Entei Route K, Suicne Route U, Raikou Altering Cave (Route AB) > Return the Ruins > The top middle cave > Use Dig > Relicanth as Lead, Wailord as Rear > Obtain Unown Note on the wall > Exit > Catch Ho-oh in the secret cave at the top left (if want) > Route Y > Artisan Hill > Catch Mew > Catch Groudon (A path), Kyogre (Route R) (you can catch it after the war between them in Aqua Town) > Catch Giratina (Torn World, you can enter it form Deep Forest (Polar Forest)) > Catch Dialga (Mt.Fullmoon)
R Area > L path > L Area > Obtain Gemstone form Steven (you can obtain it after Aqua Town event)
A Path > Area > Cave Of origin > Unlock the quiz > Catch Arceus
Finish 8 quests (you can do them after you visit Q Area):
1. Ocepac Town
2. Honey Village
3. A house in Malias
4. Route Z (find the coral in underwater Route AC)
5. A house in L Area
6. Cave in Route D
7. Desert Underpass Route K
8. Route B (Ninja Trio Cave in Route B > Cave in Teaes City > Cave in Route Q) > Exchange the point for 4 tickets
Special Places:
Outcast Island: Johto Starter, Lapras, Leafeon and Keldeo.
Navel Rock: Lugia
Birth Island: Deoxys
Abandoned Island: Mewtwo (after Groudon/Kyogre/Rayquaza event)